diff --git a/arch/x86/kernel/apic/io_apic.c b/arch/x86/kernel/apic/io_apic.c
index 1e35dd06b090ee91189cb5a52fdf026f2ca5e74b..52f352b063fdf372bddd62d5887296fa43661931 100644
--- a/arch/x86/kernel/apic/io_apic.c
+++ b/arch/x86/kernel/apic/io_apic.c
@@ -2117,6 +2117,7 @@ static inline void __init check_timer(void)
 			if (idx != -1 && irq_trigger(idx))
 				unmask_ioapic_irq(irq_get_chip_data(0));
 		}
+		irq_domain_deactivate_irq(irq_data);
 		irq_domain_activate_irq(irq_data);
 		if (timer_irq_works()) {
 			if (disable_timer_pin_1 > 0)
@@ -2138,6 +2139,7 @@ static inline void __init check_timer(void)
 		 * legacy devices should be connected to IO APIC #0
 		 */
 		replace_pin_at_irq_node(data, node, apic1, pin1, apic2, pin2);
+		irq_domain_deactivate_irq(irq_data);
 		irq_domain_activate_irq(irq_data);
 		legacy_pic->unmask(0);
 		if (timer_irq_works()) {
diff --git a/arch/x86/kernel/hpet.c b/arch/x86/kernel/hpet.c
index 85e87b46c318026ed28d87056c516aec3e5fb9ed..dc6ba5bda9fc83630c773a80c4adea6871db0a59 100644
--- a/arch/x86/kernel/hpet.c
+++ b/arch/x86/kernel/hpet.c
@@ -352,6 +352,7 @@ static int hpet_resume(struct clock_event_device *evt, int timer)
 	} else {
 		struct hpet_dev *hdev = EVT_TO_HPET_DEV(evt);
 
+		irq_domain_deactivate_irq(irq_get_irq_data(hdev->irq));
 		irq_domain_activate_irq(irq_get_irq_data(hdev->irq));
 		disable_irq(hdev->irq);
 		irq_set_affinity(hdev->irq, cpumask_of(hdev->cpu));