add pafnucy model
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- research/hpc/pafnucy/README.md 317 additions, 0 deletionsresearch/hpc/pafnucy/README.md
- research/hpc/pafnucy/default_config.yaml 93 additions, 0 deletionsresearch/hpc/pafnucy/default_config.yaml
- research/hpc/pafnucy/eval.py 71 additions, 0 deletionsresearch/hpc/pafnucy/eval.py
- research/hpc/pafnucy/export.py 43 additions, 0 deletionsresearch/hpc/pafnucy/export.py
- research/hpc/pafnucy/predict.py 137 additions, 0 deletionsresearch/hpc/pafnucy/predict.py
- research/hpc/pafnucy/prepare.py 160 additions, 0 deletionsresearch/hpc/pafnucy/prepare.py
- research/hpc/pafnucy/process_pdbbind_data.py 210 additions, 0 deletionsresearch/hpc/pafnucy/process_pdbbind_data.py
- research/hpc/pafnucy/requirements.txt 2 additions, 0 deletionsresearch/hpc/pafnucy/requirements.txt
- research/hpc/pafnucy/scripts/run_distribution_train.sh 72 additions, 0 deletionsresearch/hpc/pafnucy/scripts/run_distribution_train.sh
- research/hpc/pafnucy/scripts/run_eval.sh 64 additions, 0 deletionsresearch/hpc/pafnucy/scripts/run_eval.sh
- research/hpc/pafnucy/scripts/run_standalone_train.sh 63 additions, 0 deletionsresearch/hpc/pafnucy/scripts/run_standalone_train.sh
- research/hpc/pafnucy/src/create_mindrecord.py 108 additions, 0 deletionsresearch/hpc/pafnucy/src/create_mindrecord.py
- research/hpc/pafnucy/src/data.py 537 additions, 0 deletionsresearch/hpc/pafnucy/src/data.py
- research/hpc/pafnucy/src/dataloader.py 190 additions, 0 deletionsresearch/hpc/pafnucy/src/dataloader.py
- research/hpc/pafnucy/src/logger.py 80 additions, 0 deletionsresearch/hpc/pafnucy/src/logger.py
- research/hpc/pafnucy/src/model_utils/__init__.py 0 additions, 0 deletionsresearch/hpc/pafnucy/src/model_utils/__init__.py
- research/hpc/pafnucy/src/model_utils/config.py 128 additions, 0 deletionsresearch/hpc/pafnucy/src/model_utils/config.py
- research/hpc/pafnucy/src/model_utils/device_adapter.py 27 additions, 0 deletionsresearch/hpc/pafnucy/src/model_utils/device_adapter.py
- research/hpc/pafnucy/src/model_utils/local_adapter.py 36 additions, 0 deletionsresearch/hpc/pafnucy/src/model_utils/local_adapter.py
- research/hpc/pafnucy/src/model_utils/moxing_adapter.py 122 additions, 0 deletionsresearch/hpc/pafnucy/src/model_utils/moxing_adapter.py
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